Open Scholarship

UC Merced Faculty Advance Open Scholarship. View contributions for the Open Scholarship Reception, 2024. Citations for the slidedeck content are also available below.

Aguirre-Muñoz, Z., Pando, M., & Liu, C. (2024). Enhancing bilingual/ESL teachers’ stem instruction with targeted content and disciplinary literacy professional development: A study on knowledge and practice outcomes. Education Sciences, 14(7), 745. https://doi.org/10.3390/educsci14070745

Alvarez, J. A., Gas-Pascual, E., Malhi, S., Sánchez-Arcila, J. C., Njume, F. N., Van Der Wel, H., Zhao, Y., García-López, L., Ceron, G., Posada, J., Souza, S. P., Yap, G. S., West, C. M., & Jensen, K. D. C. (2024). The GPI sidechain of Toxoplasma gondii inhibits parasite pathogenesis. mBio, 15(10), e00527-24. https://doi.org/10.1128/mbio.00527-24

Ayyaswamy, V. A low-temperature plasma simulation framework built on foam-extend. Software / Code at GitHub. https://github.com/vayyaswamy/

Bennett, J.S., Mutch, E., Toleffson, A., Chalstrey, E., Behan, M., Cioni, E., Reddish, J., Zsambok, J., Levine, J., Cook, C.J., Francois, P., Hoyer, D., & Turchin, P. Cliopatria- A geospatical database of world-wide political entities from 3400BCE to 2424CE. SocArXiv Papers. August 2024. https://osf.io/preprints/socarxiv/24wd6

Blois, J. Project Lead. Ethical Open Science for Past Global Change Data. Moving the Quaternary data ecosystem forward. https://eos-rcn.github.io/web/home

Boria, R. A., & Blois, J. L. (2023). Phylogeography within the Peromyscus maniculatus species group: Understanding past distribution of genetic diversity and areas of refugia in western North America. Molecular Phylogenetics and Evolution, 180, 107701. https://doi.org/10.1016/j.ympev.2023.107701

Cai, K., Parajuli, P., Long, G., Wong, C. W., & Tian, L. (2021). Robust preparation of many-body ground states in Jaynes–Cummings lattices. Npj Quantum Information, 7(1), 1–9. https://doi.org/10.1038/s41534-021-00433-y

Chacon-Teran, M. A., Moustafa, C., Luu, J., Martini, A., & Findlater, M. (2024). Pyrylium- and pyridinium-based ionic liquids as friction modifiers for greases. ACS Applied Materials & Interfaces, 16(10), 13346–13351. https://doi.org/10.1021/acsami.4c01750

Chicana, B., Abbasizadeh, N., Burns, C., Taglinao, H., Spencer, J. A., & Manilay, J. O. (2022). Deletion of vhl in dmp1-expressing cells causes microenvironmental impairment of b cell lymphopoiesis. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.780945

Chandra, A. (2023). Monuments as Body Archives. Third text: Critical perspectives on contemporary art and culture. http://www.thirdtext.org/livingarchives-chandra

Cranston, K. A., Redelings, B., Reyes, L. L. S., Allman, J., McTavish, E. J., & Holder, M. T. (2019). Open tree of life taxonomy. OpenTreeofLife,  https://tree.opentreeoflife.org/about/open-tree-of-life

Davidson Squibb, S., Salmon, E., & Yan, Y. (2023). Measuring the impact of an open educational resource and library e-resource adoption program using the coup framework. The International Review of Research in Open and Distributed Learning, 24(4), 80–101. https://doi.org/10.19173/irrodl.v24i4.7420

Dawson, M.N. (Project) European Nucleotide Archive (ENA). Assembly: GCA_964020215.1 https://www.ebi.ac.uk/ena/browser/view/GCA_964020215.1

Donham, C., Chicana, B., Robling, A. G., Mohamed, A., Elizaldi, S., Chi, M., Freeman, B., Millan, A., Murugesh, D. K., Hum, N. R., Sebastian, A., Loots, G. G., & Manilay, J. O. (2021). Sclerostin depletion induces inflammation in the bone marrow of mice. International Journal of Molecular Sciences, 22(17), 9111. https://doi.org/10.3390/ijms22179111

Easton, C. and Hamilton. L. The higher education datahub. (n.d.). GitHub. https://github.com/HigherEdData

Espinoza, V., Bernacchi, L., Eriksson, M., Hayden, A., Schiller, A., & Viers, J. (2023). San Joaquin Valley community land use preferences [Dataset]. Dryad. https://doi.org/10.6071/M3BM24

Gabidolla, M., & Carreira-Perpiñán, M. Á. (2022). Optimal interpretable clustering using oblique decision trees. Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 400–410. https://doi.org/10.1145/3534678.3539361

Gaiarsa, M. P., & Bascompte, J. (2022). Hidden effects of habitat restoration on the persistence of pollination networks. Ecology Letters, 25(10), 2132–2141. https://doi.org/10.1111/ele.14081

Golash-Boza, T., Oh, H., & Kane, R. (2023). Gentrification, white encroachment, and the policing of black residents in Washington, DC. Critical Criminology, 31(1), 181–202. https://doi.org/10.1007/s10612-022-09670-9

Goldman-Mellor S. & Qin, P. (2024). Interpersonal violent injury and subsequent risk of suicide and deliberate self-harm: a register-based national cohort study from Norway, 2010–2018. eClinicalMedicine. https://www.thelancet.com/journals/eclinm/article/PIIS2589-5370(24)00021-X/fulltext

Haegel, N. M., & Kurtz, S. R. (2021). Global progress toward renewable electricity: Tracking the role of solar. IEEE Journal of Photovoltaics, 11(6), 1335–1342. https://doi.org/10.1109/JPHOTOV.2021.3104149

Hagger, M. S. (2021). Developing an open science ‘mindset.’ Health Psychology and Behavioral Medicine, 10(1), 1. https://doi.org/10.1080/21642850.2021.2012474

Hagger, M. S., & Hamilton, K. (2021). General causality orientations in self-determination theory: Meta-analysis and test of a process model. European Journal of Personality, 35(5), 710–735. https://doi.org/10.1177/0890207020962330

Hansford, T., Depaoli, S., & Canelo, K.S. The Amici Space Project. https://amicispace.ucmerced.edu/.

Hestir, E. Co-PI and Marine Science Lead. All BioSCape Data is Open Access. https://www.bioscape.io/data

Hong, M-L., & Africa, E. (2023). Perilous telling: On refugee story. https://escholarship.org/uc/item/3s79j064

Hong, M-L. K. (2023). “Nothing but my own whole body”: Revisiting radical haiku through Violet Kazue de Cristoforo’s life and work. Amerasia Journal, 49(1–2), 85–101. https://doi.org/10.1080/00447471.2023.2298291

Johnston, E. R., Amorao, A. S., & Kim, J. (2022). Sharing lessons learned: Intersectional collaboration, collective accountability, and radical care in antiracist programming. Writers: Craft & Context, 3(1), 13–23. https://doi.org/10.15763/issn.2688-9595.2022.3.1.13-23

Kairgeldin, R., & Carreira-Perpiñán, M. Á. (2024). Bivariate decision trees: Smaller, interpretable, more accurate. Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 1336–1347. https://doi.org/10.1145/3637528.3671903

Ligunas, G. D., Paniagua, G. F., LaBelle, J., Ramos-Martinez, A., Shen, K., Gerlt, E. H., Aguilar, K., Nguyen, N., Materna, S. C., & Woo, S. (2024). Tissue-specific and endogenous protein labeling with split fluorescent proteins. Developmental Biology, 514, 109–116. https://doi.org/10.1016/j.ydbio.2024.06.011

Madera, J. M., Spitzmueller, C., Yu, H., Edema-Sillo, E., & Clarke, M. S. F. (2024). External review letters in academic promotion and tenure decisions are reflective of reviewer characteristics. Research Policy, 53(2), 104939. https://doi.org/10.1016/j.respol.2023.104939

Manderson, L., Burke, N. J., & Wahlberg, A. (Eds.). (2021). Viral Loads : Anthropologies of urgency in the time of COVID-19. UCL Press.https://uclpress.co.uk/book/viral-loads/

Martin, M. (2024, September 20). Black women comrades in the struggle for liberation. Black Perspectives. https://www.aaihs.org/black-women-comrades-in-the-struggle-for-liberation/

Maxson, B. K., & Reyes, B. M. (2022). Lessons from a research trip to Mexico.https://scholarsbank.uoregon.edu/items/5fbae029-c44b-4c78-9ff3-0f766dab8804

Myers, K. The violence of love.University of California Press. https://www.ucpress.edu/books/the-violence-of-love/paper

Naidu, J., & Polonijo, A. N. (2023). Barriers and facilitators to HPV and meningococcal vaccination among men who have sex with men: A qualitative study. BMC Public Health, 23(1), 933. https://doi.org/10.1186/s12889-023-15847-w

Noerr, P. S., Zamora Alvarado, J. E., Golnaraghi, F., McCloskey, K. E., Gopinathan, A., & Dasbiswas, K. (2023). Optimal mechanical interactions direct multicellular network formation on elastic substrates. Proceedings of the National Academy of Sciences, 120(45), e2301555120. https://doi.org/10.1073/pnas.2301555120

Ojeda, C., Michener, J., & Haselswerdt, J. (2024). The politics of personal crisis: How life disruptions shape political participation. Political Behavior. https://doi.org/10.1007/s11109-024-09933-x

Oo, W. H., Gao, H., Müser, M. H., & Baykara, M. Z. (2024). Persistence of structural lubricity on contaminated graphite: Rejuvenation, aging, and friction switches. Nano Letters, 24(39), 12118–12124. https://doi.org/10.1021/acs.nanolett.4c02883

Palumbo Gaiarsa, M., Rehan, S., Barbour, M., & McFrederick, Q. (2022). Individual dietary specialization in a generalist bee varies across populations but has no effect on the richness of associated microbial communities [Dataset]. Dryad. https://doi.org/10.5061/DRYAD.5DV41NS7S

Parajuli, P., Govindarajan, A., & Tian, L. (2023). State preparation in a Jaynes-Cummings lattice with quantum optimal control. Scientific Reports, 13(1), 19924. https://doi.org/10.1038/s41598-023-47002-1

Perez-Coronel, E., & Michael Beman, J. (2022). Multiple sources of aerobic methane production in aquatic ecosystems include bacterial photosynthesis. Nature Communications, 13(1), 6454. https://doi.org/10.1038/s41467-022-34105-y

Ramírez, A. S., Garibay, K. K., Payán, D. D., Campos Gática, V., & Merino Salmeron, Y. (2022). News coverage of Mexico’s front-of-package food label policy. BMJ Global Health, 7(5), e008803. https://doi.org/10.1136/bmjgh-2022-008803

Ramírez, A. S., Mohl, S. M., Veasley, C., & Sheth, S. A. (2023). The communication of scientific information to scientists, clinicians, and the public: Recommendations for achieving health equity. Neurology, 101(7 Supplement 1). https://doi.org/10.1212/WNL.0000000000207565

Shirzad, K., & Viney, C. (2023). A critical review on applications of the Avrami equation beyond materials science. Journal of The Royal Society Interface, 20(203), 20230242. https://doi.org/10.1098/rsif.2023.0242

Strubbe, D. A. (2024). A computational materials science paradigm for a Course-based Undergraduate Research Experience (Cure). MRS Advances. https://doi.org/10.1557/s43580-024-00934-w

Thomas, J. C., Chen, W., Xiong, Y., Barker, B. A., Zhou, J., Chen, W., Rossi, A., Kelly, N., Yu, Z., Zhou, D., Kumari, S., Barnard, E. S., Robinson, J. A., Terrones, M., Schwartzberg, A., Ogletree, D. F., Rotenberg, E., Noack, M. M., Griffin, S., Raja, A. Strubbe, D.A. Rignanese, G-M, Weber-Bargioni, A. & G. Hautier, G. (2024). A substitutional quantum defect in WS2 discovered by high-throughput computational screening and fabricated by site-selective STM manipulation. Nature Communications, 15(1), 3556. https://doi.org/10.1038/s41467-024-47876-3

Thompson, D. K. (2024). The border as temporal horizon: A borderlands massacre and the contested futures of federalism in eastern Ethiopia. Journal of the Royal Anthropological Institute, 1467-9655.14207.https://doi.org/10.1111/1467-9655.14207

Torres, C. M., Knudson, K. J., & Pestle, W. J. (2022). A multiplicity of identities: The intersections of cranial vault modification, paleodiet, and sex in San Pedro de Atacama, Chile. American Journal of Biological Anthropology, 179(4), 552–567. https://doi.org/10.1002/ajpa.24619

Torres-Rouff, C., Pimentel, G., Pestle, W. J., Ugarte, M., & Knudson, K. J. (2022). The life and death of a child: Mortuary and bodily manifestations of coast–interior interactions during the late formative period (AD 100–400), northern Chile. Latin American Antiquity, 33(1), 187–204. https://doi.org/10.1017/laq.2021.56

Van Natta, M. (2024). Second-class care: How immigration law transforms clinical practice in the safety net. Journal of Health and Social Behavior, 00221465241254390. https://doi.org/10.1177/00221465241254390

Villa, S., Dwivedi, P., Stahl, A., Hinkle, T., Rose, C. M., Kirkpatrick, D. S., Tomchik, S. M., Dixit, V. M., & Wolf, F. W. (2024). OTUD6 deubiquitination of RPS7/eS7 on the free 40 S ribosome regulates global protein translation and stress. Nature Communications, 15(1), 6873. https://doi.org/10.1038/s41467-024-51284-y